Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| LIHC | rs3742570 | chr14:56016434 | A/C | 7.53E-9 | 367 | 18.93 | 27.45 | 1.13 | KM Plot |
| LIHC | rs3742823 | chr14:73705699 | C/T | 2.61E-6 | 364 | 20.38 | 13.23 | 4.93 | KM Plot |
| LIHC | rs3747742 | chr6:41162518 | C/T | 1.37E-5 | 368 | 13.53 | 20.03 | 20.7 | KM Plot |
| LIHC | rs3748597 | chr1:888659 | C/T | 1.11E-16 | 368 | 19.3 | 23.25 | 0.53 | KM Plot |
| LIHC | rs3819023 | chr20:36995664 | A/G | 1.55E-15 | 364 | 20.03 | 18.77 | 0.53 | KM Plot |
| LIHC | rs394926 | chr3:7889639 | A/T | 1.81E-7 | 367 | 19.17 | 23.1 | 3.03 | KM Plot |
| LIHC | rs3956664 | chr7:29715111 | G/A | 0 | 363 | 19.6 | 18.8 | 1.23 | KM Plot |
| LIHC | rs41379244 | chr8:32649176 | A/G | 2.29E-5 | 368 | 9.62 | 24.43 | 18.83 | KM Plot |
| LIHC | rs41486347 | chr2:37095895 | C/T | 1.15E-5 | 368 | 8.73 | 12.85 | 20.4 | KM Plot |
| LIHC | rs4334873 | chr5:147034717 | C/T | 1.84E-5 | 365 | 20.05 | 16.2 | 4.25 | KM Plot |
| LIHC | rs4386883 | chr7:29715112 | C/T | 0 | 363 | 19.6 | 18.8 | 1.23 | KM Plot |
| LIHC | rs4410845 | chr7:90317586 | C/T | 5.63E-5 | 364 | 14.5 | 20.03 | 21.1 | KM Plot |
| LIHC | rs4557624 | chr7:90317626 | A/G | 4.9E-5 | 363 | 14.5 | 20.03 | 20.9 | KM Plot |
| LIHC | rs4655937 | chr1:87712256 | A/G | 5.07E-5 | 368 | 19.33 | 20.45 | 13.13 | KM Plot |
| LIHC | rs4662791 | chr2:129052655 | C/T | 1.82E-5 | 368 | 19.05 | 19.83 | 20.58 | KM Plot |